Detailed information of SNP:
|
SNP ID:
sf0811719066(Gbrowse)
Chromosome: chr08 Position: 11719066 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 93.06% | 6.94% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 454 | 84.58% | 15.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 326 | 90.18% | 9.82% |
| Tropical Japonica | 73 | 64.38% | 35.62% |
| Japonica Intermediate | 55 | 78.18% | 21.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811719066 | C->T | INTERGENIC | None |