Detailed information of SNP:
|
SNP ID:
sf0811904128(Gbrowse)
Chromosome: chr08 Position: 11904128 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 56.90% | 43.10% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 495 | 5.45% | 94.55% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811904128 | T->A | LOC_Os08g19870(LOC_Os08g19870.1) | Synonymous |