Detailed information of SNP:
|
SNP ID:
sf0811906195(Gbrowse)
Chromosome: chr08 Position: 11906195 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 93.83% | 6.17% |
| All Indica | 793 | 92.69% | 7.31% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811906195 | C->T | INTERGENIC | None |