Detailed information of SNP:
|
SNP ID:
sf0811906228(Gbrowse)
Chromosome: chr08 Position: 11906228 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 92.33% | 7.67% |
| All Indica | 794 | 91.44% | 8.56% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811906228 | A->G | INTERGENIC | None |