Detailed information of SNP:
|
SNP ID:
sf0811924395(Gbrowse)
Chromosome: chr08 Position: 11924395 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1326 | 56.94% | 43.06% |
| All Indica | 760 | 84.87% | 15.13% |
| All Japonica | 466 | 7.94% | 92.06% |
| Aus | 52 | 84.62% | 15.38% |
| Indica I | 359 | 89.14% | 10.86% |
| Indica II | 202 | 81.68% | 18.32% |
| Indica Intermediate | 199 | 80.40% | 19.60% |
| Temperate Japonica | 331 | 2.72% | 97.28% |
| Tropical Japonica | 74 | 24.32% | 75.68% |
| Japonica Intermediate | 61 | 16.39% | 83.61% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811924395 | G->A | INTERGENIC | None |