Detailed information of SNP:
|
SNP ID:
sf0811928430(Gbrowse)
Chromosome: chr08 Position: 11928430 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 71.20% | 28.80% |
| All Indica | 795 | 91.57% | 8.43% |
| All Japonica | 496 | 33.27% | 66.73% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811928430 | C->T | LOC_Os08g19920(LOC_Os08g19920.1) | Non-Synonymous SNP |