Detailed information of SNP:
|
SNP ID:
sf0811929722(Gbrowse)
Chromosome: chr08 Position: 11929722 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 65.82% | 34.18% |
| All Indica | 763 | 45.74% | 54.26% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 63 | 71.43% | 28.57% |
| Indica I | 357 | 41.46% | 58.54% |
| Indica II | 204 | 54.90% | 45.10% |
| Indica Intermediate | 202 | 44.06% | 55.94% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811929722 | T->C | LOC_Os08g19920(LOC_Os08g19920.1) | INTRON |