Detailed information of SNP:
|
SNP ID:
sf0811930791(Gbrowse)
Chromosome: chr08 Position: 11930791 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.10% | 4.90% |
| All Indica | 789 | 94.68% | 5.32% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811930791 | G->A | LOC_Os08g19920(LOC_Os08g19920.1) | INTRON |