Detailed information of SNP:
|
SNP ID:
sf0811931083(Gbrowse)
Chromosome: chr08 Position: 11931083 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 86.36% | 13.64% |
| All Indica | 757 | 79.39% | 20.61% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 57 | 77.19% | 22.81% |
| Indica I | 357 | 81.51% | 18.49% |
| Indica II | 202 | 78.71% | 21.29% |
| Indica Intermediate | 198 | 76.26% | 23.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811931083 | T->C | LOC_Os08g19920(LOC_Os08g19920.1) | Non-Synonymous SNP |