Detailed information of SNP:
|
SNP ID:
sf0811931209(Gbrowse)
Chromosome: chr08 Position: 11931209 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.99% | 6.01% |
| All Indica | 796 | 93.09% | 6.91% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811931209 | G->A | LOC_Os08g19920(LOC_Os08g19920.1) | INTRON |