Detailed information of SNP:
|
SNP ID:
sf0811937491(Gbrowse)
Chromosome: chr08 Position: 11937491 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 62.48% | 37.52% |
| All Indica | 774 | 81.78% | 18.22% |
| All Japonica | 467 | 26.12% | 73.88% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 360 | 78.61% | 21.39% |
| Indica II | 206 | 85.44% | 14.56% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 313 | 7.99% | 92.01% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 63 | 47.62% | 52.38% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811937491 | G->A | LOC_Os08g19930(LOC_Os08g19930.1) | Non-Synonymous SNP |