Detailed information of SNP:
|
SNP ID:
sf0811939100(Gbrowse)
Chromosome: chr08 Position: 11939100 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1361 | 70.68% | 29.32% |
| All Indica | 764 | 56.28% | 43.72% |
| All Japonica | 494 | 93.12% | 6.88% |
| Aus | 51 | 60.78% | 39.22% |
| Indica I | 357 | 57.70% | 42.30% |
| Indica II | 203 | 67.00% | 33.00% |
| Indica Intermediate | 204 | 43.14% | 56.86% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811939100 | A->G | LOC_Os08g19940(LOC_Os08g19940.1) | Synonymous |