Detailed information of SNP:
|
SNP ID:
sf0811940726(Gbrowse)
Chromosome: chr08 Position: 11940726 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 60.84% | 39.16% |
| All Indica | 725 | 30.90% | 69.10% |
| All Japonica | 490 | 98.37% | 1.63% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 343 | 29.15% | 70.85% |
| Indica II | 190 | 40.53% | 59.47% |
| Indica Intermediate | 192 | 24.48% | 75.52% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811940726 | A->T | INTERGENIC | None |