Detailed information of SNP:
|
SNP ID:
sf0812002268(Gbrowse)
Chromosome: chr08 Position: 12002268 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 98.31% | 1.69% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 447 | 95.97% | 4.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 63 | 80.95% | 19.05% |
| Japonica Intermediate | 51 | 92.16% | 7.84% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812002268 | T->A | INTERGENIC | None |