Detailed information of SNP:
|
SNP ID:
sf0812009573(Gbrowse)
Chromosome: chr08 Position: 12009573 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 91.87% | 8.13% |
| All Indica | 750 | 85.47% | 14.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 351 | 82.05% | 17.95% |
| Indica II | 200 | 89.50% | 10.50% |
| Indica Intermediate | 199 | 87.44% | 12.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812009573 | A->G | INTERGENIC | None |