Detailed information of SNP:
|
SNP ID:
sf0812011214(Gbrowse)
Chromosome: chr08 Position: 12011214 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 54.36% | 45.64% |
| All Indica | 775 | 83.23% | 16.77% |
| All Japonica | 492 | 6.71% | 93.29% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 362 | 83.98% | 16.02% |
| Indica II | 210 | 82.38% | 17.62% |
| Indica Intermediate | 203 | 82.76% | 17.24% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812011214 | T->C | INTERGENIC | None |