Detailed information of SNP:
|
SNP ID:
sf0812012586(Gbrowse)
Chromosome: chr08 Position: 12012586 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 56.31% | 43.69% |
| All Indica | 764 | 88.22% | 11.78% |
| All Japonica | 488 | 4.10% | 95.90% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 357 | 89.92% | 10.08% |
| Indica II | 202 | 88.12% | 11.88% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 332 | 1.20% | 98.80% |
| Tropical Japonica | 88 | 14.77% | 85.23% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812012586 | G->A | LOC_Os08g20050(LOC_Os08g20050.1) | Non-Synonymous SNP |