Detailed information of SNP:
|
SNP ID:
sf0812013000(Gbrowse)
Chromosome: chr08 Position: 12013000 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 53.95% | 46.05% |
| All Indica | 763 | 81.78% | 18.22% |
| All Japonica | 459 | 5.45% | 94.55% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 358 | 86.03% | 13.97% |
| Indica II | 205 | 77.56% | 22.44% |
| Indica Intermediate | 200 | 78.50% | 21.50% |
| Temperate Japonica | 316 | 3.80% | 96.20% |
| Tropical Japonica | 81 | 12.35% | 87.65% |
| Japonica Intermediate | 62 | 4.84% | 95.16% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812013000 | A->G | LOC_Os08g20050(LOC_Os08g20050.1) | INTRON |