Detailed information of SNP:
|
SNP ID:
sf0812013495(Gbrowse)
Chromosome: chr08 Position: 12013495 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 74.11% | 25.89% |
| All Indica | 728 | 75.82% | 24.18% |
| All Japonica | 493 | 71.20% | 28.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 344 | 69.48% | 30.52% |
| Indica II | 198 | 81.31% | 18.69% |
| Indica Intermediate | 186 | 81.72% | 18.28% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 92 | 31.52% | 68.48% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812013495 | A->G | LOC_Os08g20050(LOC_Os08g20050.1) | INTRON |
| sf0812013495 | A->G | LOC_Os08g20050(LOC_Os08g20050.1) | SNPs that disrupt splice sites |