Detailed information of SNP:
|
SNP ID:
sf0812014551(Gbrowse)
Chromosome: chr08 Position: 12014551 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 96.38% | 3.62% |
| All Indica | 787 | 94.41% | 5.59% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812014551 | T->C | INTERGENIC | None |