Detailed information of SNP:
|
SNP ID:
sf0812015106(Gbrowse)
Chromosome: chr08 Position: 12015106 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 94.06% | 5.94% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 89 | 88.76% | 11.24% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812015106 | A->G | INTERGENIC | None |