Detailed information of SNP:
|
SNP ID:
sf0812015478(Gbrowse)
Chromosome: chr08 Position: 12015478 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 93.23% | 6.77% |
| All Indica | 756 | 89.15% | 10.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 360 | 88.06% | 11.94% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 194 | 81.96% | 18.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812015478 | A->G | INTERGENIC | None |