Detailed information of SNP:
|
SNP ID:
sf0812017251(Gbrowse)
Chromosome: chr08 Position: 12017251 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.99% | 18.01% |
| All Indica | 796 | 70.60% | 29.40% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 69.25% | 30.75% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812017251 | A->T | INTERGENIC | None |