Detailed information of SNP:
|
SNP ID:
sf0812017677(Gbrowse)
Chromosome: chr08 Position: 12017677 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.60% | 14.40% |
| All Indica | 797 | 76.79% | 23.21% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812017677 | G->A | INTERGENIC | None |