Detailed information of SNP:
|
SNP ID:
sf0812022947(Gbrowse)
Chromosome: chr08 Position: 12022947 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 88.29% | 11.71% |
| All Indica | 726 | 78.93% | 21.07% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 342 | 87.72% | 12.28% |
| Indica II | 191 | 69.63% | 30.37% |
| Indica Intermediate | 193 | 72.54% | 27.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812022947 | C->T | INTERGENIC | None |