Detailed information of SNP:
|
SNP ID:
sf0812026734(Gbrowse)
Chromosome: chr08 Position: 12026734 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 52.92% | 47.08% |
| All Indica | 734 | 23.98% | 76.02% |
| All Japonica | 492 | 95.53% | 4.47% |
| Aus | 56 | 42.86% | 57.14% |
| Indica I | 345 | 22.03% | 77.97% |
| Indica II | 202 | 26.73% | 73.27% |
| Indica Intermediate | 187 | 24.60% | 75.40% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812026734 | T->C | INTERGENIC | None |