Detailed information of SNP:
|
SNP ID:
sf0812027325(Gbrowse)
Chromosome: chr08 Position: 12027325 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 56.32% | 43.68% |
| All Indica | 766 | 87.08% | 12.92% |
| All Japonica | 489 | 8.59% | 91.41% |
| Aus | 59 | 69.49% | 30.51% |
| Indica I | 355 | 88.73% | 11.27% |
| Indica II | 206 | 83.01% | 16.99% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 333 | 4.20% | 95.80% |
| Tropical Japonica | 90 | 24.44% | 75.56% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812027325 | A->G | LOC_Os08g20060(LOC_Os08g20060.1) | Synonymous |