Detailed information of SNP:
|
SNP ID:
sf0812029096(Gbrowse)
Chromosome: chr08 Position: 12029096 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 65.05% | 34.95% |
| All Indica | 764 | 83.25% | 16.75% |
| All Japonica | 494 | 32.79% | 67.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 355 | 80.00% | 20.00% |
| Indica II | 202 | 83.66% | 16.34% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 91 | 78.02% | 21.98% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812029096 | A->G | LOC_Os08g20060(LOC_Os08g20060.1) | INTRON |