Detailed information of SNP:
|
SNP ID:
sf0812029703(Gbrowse)
Chromosome: chr08 Position: 12029703 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 51.21% | 48.79% |
| All Indica | 753 | 24.97% | 75.03% |
| All Japonica | 492 | 94.11% | 5.89% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 349 | 30.66% | 69.34% |
| Indica II | 205 | 25.85% | 74.15% |
| Indica Intermediate | 199 | 14.07% | 85.93% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812029703 | T->C | LOC_Os08g20060(LOC_Os08g20060.1) | INTRON |