Detailed information of SNP:
|
SNP ID:
sf0812035275(Gbrowse)
Chromosome: chr08 Position: 12035275 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1244 | 50.24% | 49.76% |
| All Indica | 643 | 37.64% | 62.36% |
| All Japonica | 491 | 65.17% | 34.83% |
| Aus | 56 | 80.36% | 19.64% |
| Indica I | 287 | 43.21% | 56.79% |
| Indica II | 180 | 32.22% | 67.78% |
| Indica Intermediate | 176 | 34.09% | 65.91% |
| Temperate Japonica | 334 | 84.43% | 15.57% |
| Tropical Japonica | 90 | 10.00% | 90.00% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812035275 | C->G | LOC_Os08g20080(LOC_Os08g20080.1) | INTRON |