Detailed information of SNP:
|
SNP ID:
sf0812037926(Gbrowse)
Chromosome: chr08 Position: 12037926 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1329 | 93.23% | 6.77% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 409 | 78.73% | 21.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 70.04% | 29.96% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812037926 | C->T | INTERGENIC | None |