Detailed information of SNP:
|
SNP ID:
sf0812038336(Gbrowse)
Chromosome: chr08 Position: 12038336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.11% | 3.89% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812038336 | C->T | INTERGENIC | None |