Detailed information of SNP:
|
SNP ID:
sf0812038440(Gbrowse)
Chromosome: chr08 Position: 12038440 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 93.37% | 6.63% |
| All Indica | 757 | 88.51% | 11.49% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 365 | 85.48% | 14.52% |
| Indica II | 192 | 94.27% | 5.73% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812038440 | T->C | INTERGENIC | None |