Detailed information of SNP:
|
SNP ID:
sf0812049501(Gbrowse)
Chromosome: chr08 Position: 12049501 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 96.67% | 3.33% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 91.68% | 8.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 75 | 72.00% | 28.00% |
| Japonica Intermediate | 60 | 73.33% | 26.67% |
| Group VI/Aromatic | 7 | 42.86% | 57.14% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812049501 | C->T | INTERGENIC | None |