Detailed information of SNP:
|
SNP ID:
sf0812055821(Gbrowse)
Chromosome: chr08 Position: 12055821 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 95.96% | 4.04% |
| All Indica | 793 | 95.84% | 4.16% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812055821 | C->T | LOC_Os08g20110(LOC_Os08g20110.1) | Non-Synonymous SNP |