Detailed information of SNP:
|
SNP ID:
sf0812087720(Gbrowse)
Chromosome: chr08 Position: 12087720 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 56.23% | 43.77% |
| All Indica | 788 | 93.91% | 6.09% |
| All Japonica | 495 | 5.86% | 94.14% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 205 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 19.57% | 80.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812087720 | A->T | LOC_Os08g20170(LOC_Os08g20170.1) | Synonymous |