Detailed information of SNP:
|
SNP ID:
sf0812087795(Gbrowse)
Chromosome: chr08 Position: 12087795 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.07% | 8.93% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 489 | 82.62% | 17.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 89 | 38.20% | 61.80% |
| Japonica Intermediate | 66 | 62.12% | 37.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812087795 | C->T | LOC_Os08g20170(LOC_Os08g20170.1) | Synonymous |