Detailed information of SNP:
|
SNP ID:
sf0812095329(Gbrowse)
Chromosome: chr08 Position: 12095329 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 69.10% | 30.90% |
| All Indica | 792 | 89.14% | 10.86% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812095329 | T->C | INTERGENIC | None |