Detailed information of SNP:
|
SNP ID:
sf0812105097(Gbrowse)
Chromosome: chr08 Position: 12105097 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.77% | 45.23% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812105097 | C->A | LOC_Os08g20180(LOC_Os08g20180.1) | SNPs that introduce stop codons |