Detailed information of SNP:
|
SNP ID:
sf0812108375(Gbrowse)
Chromosome: chr08 Position: 12108375 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 55.91% | 44.09% |
| All Indica | 794 | 93.83% | 6.17% |
| All Japonica | 489 | 4.29% | 95.71% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 87 | 13.79% | 86.21% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812108375 | T->C | LOC_Os08g20180(LOC_Os08g20180.1) | Synonymous |