Detailed information of SNP:
|
SNP ID:
sf0812251846(Gbrowse)
Chromosome: chr08 Position: 12251846 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 95.89% | 4.11% |
| All Indica | 770 | 92.86% | 7.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 92.24% | 7.76% |
| Indica II | 204 | 99.02% | 0.98% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812251846 | A->C | INTERGENIC | None |