Detailed information of SNP:
|
SNP ID:
sf0812295243(Gbrowse)
Chromosome: chr08 Position: 12295243 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 93.59% | 6.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 84.95% | 15.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 39.33% | 60.67% |
| Japonica Intermediate | 61 | 77.05% | 22.95% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812295243 | C->G | LOC_Os08g20486(LOC_Os08g20486.1) | INTRON |