Detailed information of SNP:
|
SNP ID:
sf0812329958(Gbrowse)
Chromosome: chr08 Position: 12329958 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 92.96% | 7.04% |
| All Indica | 774 | 96.25% | 3.75% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 205 | 92.20% | 7.80% |
| Indica Intermediate | 198 | 96.97% | 3.03% |
| Temperate Japonica | 334 | 87.13% | 12.87% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812329958 | T->G | INTERGENIC | None |