Detailed information of SNP:
|
SNP ID:
sf0812485730(Gbrowse)
Chromosome: chr08 Position: 12485730 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 52.27% | 47.73% |
| All Indica | 741 | 89.61% | 10.39% |
| All Japonica | 484 | 2.69% | 97.31% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 352 | 93.47% | 6.53% |
| Indica II | 191 | 84.29% | 15.71% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 327 | 1.22% | 98.78% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812485730 | T->C | LOC_Os08g20790(LOC_Os08g20790.1) | Non-Synonymous SNP |