Detailed information of SNP:
|
SNP ID:
sf0812489527(Gbrowse)
Chromosome: chr08 Position: 12489527 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 93.18% | 6.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 84.36% | 15.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 87 | 44.83% | 55.17% |
| Japonica Intermediate | 64 | 64.06% | 35.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812489527 | C->T | LOC_Os08g20800(LOC_Os08g20800.1) | INTRON |