Detailed information of SNP:
|
SNP ID:
sf0812496237(Gbrowse)
Chromosome: chr08 Position: 12496237 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 98.94% | 1.06% |
| All Indica | 794 | 99.75% | 0.25% |
| All Japonica | 494 | 97.37% | 2.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812496237 | G->A | LOC_Os08g20830(LOC_Os08g20830.1) | INTRON |