Detailed information of SNP:
|
SNP ID:
sf0812497530(Gbrowse)
Chromosome: chr08 Position: 12497530 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 57.59% | 42.41% |
| All Indica | 788 | 86.93% | 13.07% |
| All Japonica | 493 | 6.49% | 93.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812497530 | C->T | INTERGENIC | None |