Detailed information of SNP:
|
SNP ID:
sf0812522509(Gbrowse)
Chromosome: chr08 Position: 12522509 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.25% | 3.75% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 93.09% | 6.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 65 | 72.31% | 27.69% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812522509 | C->T | INTERGENIC | None |