Detailed information of SNP:



SNP ID: sf0812522509(Gbrowse)

Chromosome: chr08

Position: 12522509
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 96.25% 3.75%
All Indica799 100.00% 0.00%
All Japonica492 93.09% 6.91%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica92 85.87% 14.13%
Japonica Intermediate65 72.31% 27.69%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0812522509 C->T INTERGENIC None