Detailed information of SNP:
|
SNP ID:
sf0812582419(Gbrowse)
Chromosome: chr08 Position: 12582419 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 97.24% | 2.76% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 457 | 92.34% | 7.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 91.56% | 8.44% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 60 | 86.67% | 13.33% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812582419 | G->T | INTERGENIC | None |