Detailed information of SNP:
|
SNP ID:
sf0812589302(Gbrowse)
Chromosome: chr08 Position: 12589302 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 63.71% | 36.29% |
| All Indica | 796 | 92.21% | 7.79% |
| All Japonica | 485 | 12.99% | 87.01% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 85 | 30.59% | 69.41% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812589302 | T->C | LOC_Os08g21060(LOC_Os08g21060.1) | Non-Synonymous SNP |